AuthorsTitlePublisherJournalYearIssuePagesDOIPMIDType
Matthias C. Rillig, Shin Woong Kim, Andreas Schäffer, Gabriel Sigmund, Ksenia J. Groh, Zhanyun WangAbout “Controls” in Pollution-Ecology Experiments in the AnthropoceneEnviron. Sci. Technol.20225611928-1193010.1021/acs.est.2c05460papers
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Melanie Vital, Sebastián Grondona, Natasha Dimova, Daniel MartinezFactors affecting the radon (222Rn) emanation from aquifer rock materials: Implications for radiological and groundwater tracer studiesApplied Radiation and Isotopes202218911043310.1016/j.apradiso.2022.110433papers
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Brugiroux S, Berry D, Ring D, Barnich N, Daims H, Stecher BSpecific localization and quantification of the Oligo-Mouse-Microbiota (OMM12) by fluorescence in situ hybridization (FISH)Current Protocols20222e54810.1002/cpz1.548papers
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Company J, Valiente N, Forstesa J, García-Comendador J, Lucas-Borja ME, ortega R, Miralles I, Estrany JSecondary succession and parent material drive soil bacterial community composition in terraced abandoned olive groves from a Mediterranean hyper-humid mountainous areaAgriculture Ecosystems & Environment2022332Article 10793210.1016/j.agee.2022.107932papers
Ezzat R. Marzouk, Erica Donner, Frank von der Kammer, Elizabeth H. Bailey, Waleed H. Shetaya, Scott D. Young, Enzo LombiAssessing the Lability and Environmental Mobility of Organically Bound Copper by Stable Isotope DilutionEnviron. Sci. Technol.2022565580-558910.1021/acs.est.2c00964papers
Verbrigghe N, Meeran K, Bahn M, Fuchslueger L, Janssens IA, Richter A, Sigurdsson BD, Soong JL, Vicca ANegative priming of soil organic matter following long-term in situ warming of sub-arctic soilsGeoderma2022410Article 11565210.1016/j.geoderma.2021.115652papers
Michael Zumstein, Glauco Battagliarin, Andreas Kuenkel, Michael SanderEnvironmental Biodegradation of Water-Soluble Polymers: Key Considerations and Ways ForwardAccounts of Chemical Research2022552163–216710.1021/acs.accounts.2c00232papers
Mitrović M, Kostešić E, Marković T, Selak L, Hausmann B, Pjevac P, Orlić SMicrobial community composition and hydrochemistry of underexplored geothermal waters in CroatiaSystematic and Applied Microbiology2022https://doi.org/10.1016/j.syapm.2022.126359papers
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Pokorny L, Hausmann B, Pjevac P, Schagerl MHow to Verify Non-Presence—The Challenge of Axenic Algae CultivationCells2022 https://doi.org/10.3390/cells11162594papers
Huber KJ, Pester M, Eichorst SA, Navarrete AA, Fösel BUEditorial: Acidobacteriota-Towards unraveling the secrets of a widespread though enigmatic phylumFront Microbiol.20221396060210.3389/fmicb.2022.960602other
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Paulo A. Herrera, Christian Langevin, Glenn HammondEstimation of the Water Table Position in Unconfined Aquifers with MODFLOW 6Groundwater202210.1111/gwat.13270papers
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Snežana Maletić, Marijana Kragulj Isakovski, Gabriel Sigmund, Thilo Hofmann, Thorsten Hüffer, Jelena Beljin, Srđan RončevićComparing biochar and hydrochar for reducing the risk of organic contaminants in polluted river sediments used for growing energy cropsScience of The Total Environment202284310.1016/j.scitotenv.2022.157122papers
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Charlotte Henkel, Thorsten Hüffer, Thilo HofmannPolyvinyl Chloride Microplastics Leach Phthalates into the Aquatic Environment over DecadesEnviron. Sci. Technol.20225614507–1451610.1021/acs.est.2c05108papers
von Baeckmann C, Riva A, Guggenberger P, Kählig H, Han SW, Inan D, Del Favero G, Berry D, Kleitz FTargeting Gut Bacteria using Inulin-Conjugated Mesoporous Silica NanoparticlesAdvanced Materials Interfaces202210.1002/admi.202102558papers
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Robert Brünjes, Jan Schüürman, Frank von der Kammer, Thilo HofmannRapid analysis of gunshot residues with single-particle inductively coupled plasma time-of-flight mass spectrometryForensic Science International202233210.1016/j.forsciint.2022.111202papers
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ortega R, Zema DA, Valiente N, Soria R, Miralles I, Lucas-Borja METhe Impacts of Post-Fire Straw Mulching and Salvage Logging on Soil Properties and Plant Diversity in a Mediterranean Burned Pine ForestForests202213Article 158010.3390/f13101580papers
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Biasi C, Jokinen S, Prommer J, Ambus P, Dörsch P, Yu L, Granger S, Boeckx P, Van Nieuland K, Brüggemann N, Wissel H, Voropaev A, Zilberman T, Jäntti H, Trubnikova T, Welti N, Voigt C, Gebus-Czupyt B, Czupyt Z,  Wanek WChallenges in measuring nitrogen isotope signatures in inorganic nitrogen forms: an inter-laboratory comparison of three common measurement approachesRapid Communications in Mass Spectrometry202236Article e937010.1002/rcm.9370papers
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Allesson L, Valiente N, Dörsch P, Andersen T, Eiler A, O Hessen DDrivers and variability of CO2:O2 saturation along a gradient from boreal to Arctic lakesScientific Reports202212Article 1898910.1038/s41598-022-23705-9papers
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Mohn J, Biasi C, Bodé S, Boeckx P, Brewer PJ, Eggleston S, Geilmann H, Guillevic M, Kaiser J, Kantnerová K, Moossen H, Muller J, Nakagawa M, Pearce R, von Rein I, Steger D, Toyoda S, Wanek W, Wexler SK, Yoshida N, Yu LIsotopically characterised N2O reference materials for use as community standardsRapid Communications in Mass Spectrometry202236Article e929610.1002/rcm.9296papers
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Oburger E, Schmidt H, Staudinger CHarnessing belowground processes for sustainable intensification of agricultural systemsPlant and Soil2022478177-20910.1007/s11104-022-05508-zpapers
Kwatcho Kengdo S, Peršoh D, Schindlbacher A, Heinzle J, Tian Y, Wanek W, Borken WLong-term soil warming alters fine root dynamics and morphology, and their ectomycorrhizal fungal community in a temperate forest soilGlobal Change Biology2022283441-345810.1111/gcb.16155papers
Alejandro García-Gil, Roberto Poncela Poncela, Elzbieta Skupien Balon, Angel Morales Gonzalez-Moro, Rafael J. Lario-Báscones, Miguel Angel Marazuela, Noelia Cruz-Pérez, Juan C. SantamartaHeterogeneity-Driven Hydrodynamics Conditions the Hydrochemistry of Spring Water in Volcanic IslandsGroundwater202261375-38810.1111/gwat.13249papers
Maxwell TL, Canarini A, Bogdanovic I, Böckle T, Martin V, Noll L, Prommer J, Séneca J, Simon E, Piepho HP, Herndl M, Pötsch EM, Kaiser C, Richter A, Bahn M, Wanek WContrasting drivers of belowground nitrogen cycling in a montane grassland exposed to a multifactorial global change experiment with elevated CO, warming, and droughtGlobal Change Biology2022282425-244110.1111/gcb.16035papers
Lintner M, Schagerl M, Lintner B, Wanek W, Keul N, Heinz PEffect of light on the metabolism of the foraminifera Cribroelphidium selseyense lacking photosymbionts and kleptoplastsJournal of Photochemistry and Photobiology202211Article 10013310.1016/j.jpap.2022.100133papers
Wang L, Zhou Y, Chen Y, Xu Z, Zhang J, Liu Y, Joly FXLitter diversity accelerates labile carbon but slows recalcitrant carbon decompositionSoil Biology and Biochemistry2022168Article 10863210.1016/j.soilbio.2022.108632papers
Dietrich M, Montesinos-Navarro A, Gabriel R, Strasser F, Meier DV, Mayerhofer W, Gorka S, Wiesenbauer J, Martin V, Weidinger M, Richter A, Kaiser C, Woebken DBoth abundant and rare fungi colonizing Fagus sylvatica ectomycorrhizal root-tips shape associated bacterial communitiesCommun Biol20225126110.1038/s42003-022-04178-ypapers
Gabriel Sigmund, Hans Peter H. Arp, Benedikt M. Aumeier, Thomas D. Bucheli, Benny Chefetz, Wei Chen, Steven T. J. Droge, Satoshi Endo, Beate I. Escher, Sarah E. Hale, Thilo Hofmann, Joseph Pignatello, Thorsten Reemtsma, Torsten C. Schmidt, Carina D. Schönsee, Martin ScheringerSorption and Mobility of Charged Organic Compounds: How to Confront and Overcome Limitations in Their AssessmentEnviron. Sci. Technol.2022564702-271010.1021/acs.est.2c00570papers
Helene Walch, Frank von der Kammer, Thilo HofmannFreshwater suspended particulate matter—Key components and processes in floc formation and dynamicsWater Research202222010.1016/j.watres.2022.118655papers
Patrizia Pfohl, Marion Wagner, Lars Meyer, Prado Domercq, Antonia Praetorius, Thorsten Hüffer, Thilo HofmannEnvironmental Degradation of Microplastics: How to Measure Fragmentation Rates to Secondary Micro- and Nanoplastic Fragments and Dissociation into Dissolved OrganicsEnviron. Sci. Technol.20225611323–1133410.1021/acs.est.2c01228papers
Schmoll M, Hinterdobler WTools for adapting to a complex habitat: G-protein coupled receptors in TrichodermaProgress in Molecular Biology and Translational Science2022165-9710.1016/bs.pmbts.2022.06.003papers
Speetjens NJ, Tanski G, Martin V, Wagner J, Richter A, Hugelius G, Boucher C, Lodi R, Knoblauch C, Koch BP, Wünsch U, Lantuit H, Vonk JEDissolved organic matter characterization in soils and streams in a small coastal low-Arctic catchmentBiogeosciences2022193073-309710.5194/bg-19-3073-2022papers
Hietz P, Wagner K, Nunes Ramos F, Cabral J, Agudelo C, Benavides AM, Cach-Pérez MJ, Cardelús C, Chilpa Galván N, Costa L, de Paula Oliveira R, Einzmann H, Farias R, Guzmán JV, Kattge J, Kessler M, Kirby C, Kreft H, Kromer T, Males J, Monsalve Correa S, Moreno-Chacón M, Petter G, Reyes-Garcia C, Saldana A, Schellenberger Costa D, Taylor A, Velázquez Rosas N, Wanek W, Woods C, Zotz GPutting vascular epiphytes on the traits mapJournal of Ecology2022110340-35810.1111/1365-2745.13802papers
Alcolombri U, Pioli R, Stocker R, Berry DSingle-cell stable isotope probing in microbial ecologyISME Commun2022255https://doi.org/10.1038/s43705-022-00142-3papers
Timmis K, Berry D, Bonfante P, Coleman M, Cunliffe M, Danchin A, Galperin M, Huang W, Lopez P, Stewart F, Wood TJuan Luis Ramos: An exceptional Editor of Environmental Microbiology.Environ Microbiol202210.1111/1462-2920.1631536533904other
Hodžić A, Dheilly NM, Cabezas-Cruz A, Berry DThe helminth holobiont: a multidimensional host-parasite-microbiota interaction.Trends Parasitol202210.1016/j.pt.2022.11.01236503639papers
Reyes-Garcia C, Pereira-Zaldívar NA, Espadas-Manrique C, Tamayo-Chim M, Chilpa-Galván N, Cach-Pérez MJ, Ramírez-Medina M, Benavides AM, Hietz P, Zotz G, Andrade JL, Cardelús C, de Paula Oliveira R, Einzmann HJR, Guzmán Jacob V, Kromer T, Pinzón JP, Sarmento Cabral J, Wanek W, Woods CNew Proposal of Epiphytic Bromeliaceae Functional Groups to Include Nebulophytes and Shallow TanksPlants202211Article 315110.3390/plants1122315136432880papers
Baumgartner M, Zirnbauer R, Schlager S, Mertens D, Gasche N, Sladek B, Herbold C, Bochkareva O, Emelianenko V, Vogelsang H, Lang M, Klotz A, Moik B, Makristathis A, Berry D, Dabsch S, Khare V, Gasche CAtypical enteropathogenic are associated with disease activity in ulcerative colitis.Gut Microbes20221214321810.1080/19490976.2022.214321836415023papers
Sekurova ON, Zehl M, Predl M, Hunyadi P, Rattei T, Zotchev SBTargeted Metabolomics and High-Throughput RNA Sequencing-Based Transcriptomics Reveal Massive Changes in the Streptomyces venezuelae NRRL B-65442 Metabolism Caused by Ethanol Shock.Microbiol Spectr20226e036722210.1128/spectrum.03672-2236314940papers
Halter T, Hendrickx F, Horn M, Küsel KA novel widespread MITE wlement in the repeat-rich genome of the endosymbiont of the spider Oedothorax gibbosusMicrobiol Spectr2022e026272210.1128/spectrum.02627-2236301108papers
Overbeeke A, Lang M, Hausmann B, Watzka M, Nikolov G, Schwarz J, Kohl G, De Paepe K, Eislmayr K, Decker T, Richter A, Berry DImpaired Mucosal Homeostasis in Short-Term Fiber Deprivation Is Due to Reduced Mucus Production Rather Than Overgrowth of Mucus-Degrading Bacteria.Nutrients202214380210.3390/nu1418380236145178papers
Kwatcho Kengdo S, Ahrens B, Tian Y, Heinzle J, Wanek W, Schindlbacher A, Borken WIncrease in carbon input by enhanced fine root turnover in a long-term warmed forest soilSci Total Environ2022855Article 15880010.1016/j.scitotenv.2022.15880036116665papers
Carregosa D, Pinto C, Ávila-Gálvez MÁ, Bastos P, Berry D, Santos CNA look beyond dietary (poly)phenols: The low molecular weight phenolic metabolites and their concentrations in human circulation.Compr Rev Food Sci Food Saf202253931-396210.1111/1541-4337.1300636037277papers
Gwak JH, Awala SI, Nguyen NL, Yu WJ, Yang HY, von Bergen M, Jehmlich N, Kits KD, Loy A, Dunfield PF, Dahl C, Hyun JH, Rhee SKSulfur and methane oxidation by a single microorganism.Proc Natl Acad Sci U S A202232e211479911910.1073/pnas.211479911935914169papers
Bernard C, Locard-Paulet M, Noël C, Duchateau M, Giai Gianetto Q, Moumen B, Rattei T, Hechard Y, Jensen LJ, Matondo M, Samba-Louaka AA time-resolved multi-omics atlas of Acanthamoeba castellanii encystment.Nat Commun20221410410.1038/s41467-022-31832-035835784papers
Herndl GJ, Bayer B, Baltar F, Reinthaler TProkaryotic Life in the Deep Ocean's Water Column.Ann Rev Mar Sci202210.1146/annurev-marine-032122-11565535834811papers
Schwartzman JA, Ebrahimi A, Chadwick G, Sato Y, Roller BRK, Orphan VJ, Cordero OXBacterial growth in multicellular aggregates leads to the emergence of complex life cycles.Curr Biol2022In press10.1016/j.cub.2022.06.01135777363papers
Piel D, Bruto M, Labreuche Y, Blanquart F, Goudenège D, Barcia-Cruz R, Chenivesse S, Le Panse S, James A, Dubert J, Petton B, Lieberman E, Wegner KM, Hussain FA, Kauffman KM, Polz MF, Bikard D, Gandon S, Rocha EPC, Le Roux FPhage-host coevolution in natural populations.Nat Microbiol202271075-108610.1038/s41564-022-01157-135760840papers
Leung PM, Daebeler A, Chiri E, Hanchapola I, Gillett DL, Schittenhelm RB, Daims H, Greening CA nitrite-oxidising bacterium constitutively consumes atmospheric hydrogenISME J2022162213-221910.1038/s41396-022-01265-035752717papers
Ge X, Pereira FC, Mitteregger M, Berry D, Zhang M, Hausmann B, Zhang J, Schintlmeister A, Wagner M, Cheng JXSRS-FISH: A high-throughput platform linking microbiome metabolism to identity at the single-cell level.Proc Natl Acad Sci U S A202226e220351911910.1073/pnas.220351911935727976papers
Ayeni KI, Berry D, Wisgrill L, Warth B, Ezekiel CNEarly-life chemical exposome and gut microbiome development: African research perspectives within a global environmental health context.Trends Microbiol2022111084-110010.1016/j.tim.2022.05.00835697586papers
Karl CM, Vidakovic A, Pjevac P, Hausmann B, Schleining G, Ley JP, Berry D, Hans J, Wendelin M, König J, Somoza V, Lieder BIndividual Sweet Taste Perception Influences Salivary Characteristics After Orosensory Stimulation With Sucrose and Noncaloric Sweeteners.Front Nutr202283172610.3389/fnut.2022.83172635694162papers
Deehan EC, Zhang Z, Riva A, Armet AM, Perez-Muñoz ME, Nguyen NK, Krysa JA, Seethaler B, Zhao YY, Cole J, Li F, Hausmann B, Spittler A, Nazare JA, Delzenne NM, Curtis JM, Wismer WV, Proctor SD, Bakal JA, Bischoff SC, Knights D, Field CJ, Berry D, Prado CM, Walter JElucidating the role of the gut microbiota in the physiological effects of dietary fiber.Microbiome202217710.1186/s40168-022-01248-535562794papers
Jamnik T, Flasch M, Braun D, Fareed Y, Wasinger D, Seki D, Berry D, Berger A, Wisgrill L, Warth BNext-generation biomonitoring of the early-life chemical exposome in neonatal and infant development.Nat Commun20221265310.1038/s41467-022-30204-y35550507papers
Rangel F, Enes P, Gasco L, Gai F, Hausmann B, Berry D, Oliva-Teles A, Serra CR, Pereira FCDifferential Modulation of the European Sea Bass Gut Microbiota by Distinct Insect Meals.Front Microbiol202283103410.3389/fmicb.2022.83103435495644papers
Seki D, Schauberger C, Hausmann B, Berger A, Wisgrill L, Berry DIndividuality of the Extremely Premature Infant Gut Microbiota Is Driven by Ecological Drift.mSystems2022e001632210.1128/msystems.00163-2235473303papers
Söllinger A, Séneca J, Dahl MB, Motleleng LL, Prommer J, Verbruggen E, Sigurdsson BD, Janssens I, Schiestl RH, Urich T, Richter A, Tveit ATDown-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warmingScience Advances20228eabm323010.1126/sciadv.abm323035333567papers
Zioutis C, Seki D, Bauchinger F, Herbold C, Berger A, Wisgrill L, Berry DEcological Processes Shaping Microbiomes of Extremely Low Birthweight Infants.Front Microbiol202281213610.3389/fmicb.2022.81213635295290papers
Singleton CM, Petriglieri F, Wasmund K, Nierychlo M, Kondrotaite Z, Petersen JF, Peces M, Dueholm MS, Wagner M, Nielsen PHThe novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide.ISME J202261605-161610.1038/s41396-022-01212-z35217776papers
Crudo F, Aichinger G, Dellafiora L, Kiss E, Mihajlovic J, Del Favero G, Berry D, Dall'Asta C, Marko DPersistence of the antagonistic effects of a natural mixture of Alternaria mycotoxins on the estrogen-like activity of human feces after anaerobic incubation.Toxicol Lett202288-9910.1016/j.toxlet.2022.01.01535104616papers
Reichert T, Rammig A, Fuchslueger L, Lugli LF, Quesada CA, Fleischer KPlant phosphorus-use and -acquisition strategies in AmazoniaNew Phytologist20222341126-114310.1111/nph.1798535060130papers
Kauffman KM, Chang WK, Brown JM, Hussain FA, Yang J, Polz MF, Kelly LResolving the structure of phage-bacteria interactions in the context of natural diversity.Nat Commun2022137210.1038/s41467-021-27583-z35042853papers
Selberherr E, Penz T, König L, Conrady B, Siegl A, Horn M, Schmitz-Esser SThe life cycle-dependent transcriptional profile of the obligate intracellular amoeba symbiont Amoebophilus asiaticus.FEMS Microbiol Ecol202298fiac00110.1093/femsec/fiac00134999767papers
McNichol J, Dyksma S, Greuter L, Seewald JS, Sylva SP, Sievert SMGenus-specific carbon fixation activity measurements reveal distinct responses to oxygen among hydrothermal vent CampylobacteriaAppl Environ Microbiol20222e020832110.1128/AEM.02083-2134788061papers
Schnorr SL, Berry DLipid synthesis at the trophic base as the source for energy management to build complex structures.Curr Opin Biotechnol2022364-37310.1016/j.copbio.2021.09.01434735986papers
Valiente N, Jirsa F, Hein T, Wanek W, Prommer J, Bonin P, Gómez-Alday JJThe role of coupled DNRA-Anammox during nitrate removal in a highly saline lakeScience of The Total Environment2022806Article 15072610.1016/j.scitotenv.2021.15072634606874papers
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Szabó G, Schulz F, Küsel K, Toenshoff ER, Horn MEvolutionarily recent dual obligatory symbiosis among adelgids indicates a transition between fungus- and insect-associated lifestyles.ISME J20221247-25610.1038/s41396-021-01056-z34294881papers