AuthorsTitlePublisherJournalYearIssuePagesDOIPMIDType
Margalef O, Sardans J, Fernández-Martínez M, Molowny-Horas R, Janssens IA, Ciais P, Richter A, Obersteiner M, Asenio D, Peñuelas JGlobal patterns of phosphatase activity in natural soilsScientific Reports201771310.1038/s41598-017-01418-8papers
Wukovits J, Enge AJ, Wanek W, Watzka M, Heinz PIncreased temperature causes different carbon and nitrogen processing patterns in two common intertidal foraminifera (Ammonia tepida and Haynesina germanica)Biogeosciences2017112815-282910.5194/bg-14-2815-2017papers
Wild B, Alaei S, Bengston P, Bodé S, Boeckx P, Schnecker J, Mayerhofer W, Rütting TShort-term carbon input increases microbial nitrogen demand, but not microbial nitrogen mining, in a set of boreal forest soilsBiogeochemistry2017136261-27810.1007/s10533-017-0391-0papers
Turner S, Meyer-Stüve S, Schippers A, Guggenberger G, Schaarschmidt F, Wild B, Richter A, Dohrmann R, Mikutta RMicrobial utilization of mineral-associated nitrogen in soilsSoil Biology and Biochemistry2017104185-19610.1016/j.soilbio.2016.10.010papers
Liu M, Li C, Xu X, Wanek W, Jiang N, Wang H, Yang XOrganic and inorganic nitrogen uptake by 21 dominant tree species in temperate and tropical forestsTree Physiology2017111515-152610.1093/treephys/tpx046papers
Hu Y, Zheng Q, Wanek WFlux Analysis of Free Amino Sugars and Amino Acids in Soils by Isotope Tracing with a Novel Liquid Chromatography/High Resolution Mass Spectrometry Platformanalytical chemistry2017179192-920010.1021/acs.analchem.7b01938papers
Cordero I, Ruiz-Diez B, Balaguer L, Richter A, Pueyo JJ, Rincon ARhizospheric microbial community of Caesalpinia spinosa (Mol.) Kuntze in conserved and deforested zones of the Atiquipa fog forest in PeruApplied Soil Ecology2017114132-14110.1016/j.apsoil.2017.02.015papers
Canarini A, Kiær LP, Dijkstra FASoil carbon loss regulated by drought intensity and available substrate: A meta-analysisSoil Biology and Biochemistry201711290-9910.1016/j.soilbio.2017.04.020papers
Harrison JP, Angel R, Cockell CSAstrobiology as a framework for investigating antibiotic susceptibility: a study of Halomonas hydrothermalisJ R Soc Interface2017126online only10.1098/rsif.2016.0942 papers
Berry DHidden potential: Diet-driven changes in redox level shape the rumen microbiomeEnvironmental microbiology2017119-2010.1111/1462-2920.13634other
Puschenreiter M, Gruber B, Wenzel WW, Schindlegger Y, Hann S, Spangl B, Schenkeveld WDC, Kraemer SM, Oburger EPhytosiderophore-induced mobilization and uptake of Cd, Cu, Fe, Ni, Pb and Zn by wheat plants grown on metal-enriched soilsEnvironmental and Experimental Botany201713867-7610.1016/j.envexpbot.2017.03.011papers
Canarini A, Mariotte P, Ingram L, Merchant A, Dijkstra FAMineral-Associated Soil Carbon is Resistant to Drought but Sensitive to Legumes and Microbial Biomass in an Australian GrasslandEcosystems2017e-publication, 1-1510.1007/s10021-017-0152-xpapers
Mooshammer M, Hofhansl F, Frank AH, Wanek W, Hämmerle I, Leitner S, Schnecker J, Wild B, Watzka M, Keiblinger KM, Zechmeister­‐Boltenstern S, Richter ADecoupling of microbial carbon, nitrogen, and phosphorus cycling in response to extreme temperature eventsScience Advances201731310.1126/sciadv.1602781papers
Dumschott K, Richter A, Loescher W, Merchant APost photosynthetic carbon partitioning to sugar alcohols and consequences for plant growthPhytochemistry2017144243-25210.1016/j.phytochem.2017.09.019papers
Berry DThe unexpected versatility of the cellulosomeEnvironmental microbiology2017113-1410.1111/1462-2920.13598other
Manzoni S, Capek P, Mooshammer M, Lindahl BD, Richter A, Santruckova HOptimal metabolic regulation along resource stoichiometry gradientsEcology Letters2017201182-119110.1111/ele.12815papers
Eichorst SA, Trojan D, Woebken DTerriglobus201710.1002/9781118960608.gbm00003.pub2book
Käding N, Kaufhold I, Muller C, Szaszák M, Shima K, Weinmaier T, Lomas R, Conesa A, Schmitt-Kopplin P, Rattei T, Rupp JGrowth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function.Front Cell Infect Microbiol201749910.3389/fcimb.2017.0049929259924papers
Eder T, Kobus S, Stallmann S, Stepanow S, Köhrer K, Hegemann JH, Rattei TGenome sequencing of Chlamydia trachomatis serovars E and F reveals substantial genetic variation.Pathog Dis201710.1093/femspd/ftx12029186396papers
Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS, van Oppen MJHCoral-associated viral communities show high levels of diversity and host auxiliary functions.PeerJ2017e405410.7717/peerj.405429158985papers
Füssel J, Lücker S, Yilmaz P, Nowka B, van Kessel MAHJ, Bourceau P, Hach PF, Littmann S, Berg J, Spieck E, Daims H, Kuypers MMM, Lam PAdaptability as the key to success for the ubiquitous marine nitrite oxidizer NitrococcusSci Adv20173e170080710.1126/sciadv.170080729109973papers
Hubalek V, Buck M, Tan B, Foght J, Wendeberg A, Berry D, Bertilsson S, Eiler AVitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.mSystems20175e00038-1710.1128/mSystems.00038-1729104938papers
Capel E, Barnier JP, Zomer AL, Bole-Feysot C, Nussbaumer T, Jamet A, Lécuyer H, Euphrasie D, Virion Z, Frapy E, Pélissier P, Join-Lambert O, Rattei T, Bourdoulous S, Nassif X, Coureuil MPeripheral blood vessels are a niche for blood-borne meningococci.Virulence201781808-181910.1080/21505594.2017.139144629099305papers
Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin CAmmonia-oxidising archaea living at low pH: Insights from comparative genomics.Environ. Microbiol.2017124939-495210.1111/1462-2920.1397129098760papers
Liu S, Han P, Hink L, Prosser JI, Wagner M, Brüggemann NAbiotic Conversion of Extracellular NH2OH Contributes to N2O Emission during Ammonia Oxidation.Environ. Sci. Technol.20172213122-1313210.1021/acs.est.7b0236029039187papers
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy ACCritical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.Nat. Methods201710.1038/nmeth.445828967888papers
Jochum LM, Chena X, Lever MA, Loy A, Jørgensen BB, Schramm A, Kjeldsen KUDepth distribution and assembly of sulfate-reducing microbial communities in marine sediments of Aarhus BayAppl Environ Microbiol201783e01547-1710.1128/AEM.01547-1728939599papers
Lesaulnier CC, Herbold CW, Pelikan C, Gérard C, Le Coz X, Gagnot S, Berry D, Niggemann J, Dittmar T, Singer GA, Loy ABottled aqua incognita: Microbiota assembly and dissolved organic matter diversity in natural mineral watersMicrobiome2017512610.1186/s40168-017-0344-928938908papers
Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin PSulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.Sci Rep201711104710.1038/s41598-017-10369-z28887494papers
Naughton LM, Romano S, O'Gara F, Dobson ADWIdentification of secondary metabolite gene clusters in the Pseudovibrio genus reveals encouraging biosynthetic potential toward the production of novel bioactive compoundsFront Microbiol20178149410.3389/fmicb.2017.0149428868049papers
Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, Daebeler A, Romano S, Albertsen M, Stein LY, Daims H, Wagner MKinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.Nature2017549269-27210.1038/nature2367928847001papers
Pjevac P, Schauberger C, Poghosyan L, Herbold CW, van Kessel MAHJ, Daebeler A, Steinberger M, Jetten MSM, Luecker S, Wagner M, Daims HAmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environmentFront Microbiol20178:150810.3389/fmicb.2017.0150828824606papers
Böck D, Medeiros JM, Tsao HF, Penz T, Weiss GL, Aistleitner K, Horn M, Pilhofer MIn situ architecture, function, and evolution of a contractile injection system.Science20176352713-71710.1126/science.aan790428818949papers
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke TMinimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat. Biotechnol.20178725-73110.1038/nbt.389328787424papers
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke TMinimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat. Biotechnol.20178725-73110.1038/nbt.389328787424papers
Ladurner A, Zehl M, Grienke U, Hofstadler C, Faur N, Pereira FC, Berry D, Dirsch VM, Rollinger JMAllspice and Clove As Source of Triterpene Acids Activating the G Protein-Coupled Bile Acid Receptor TGR5.Front Pharmacol2017846810.3389/fphar.2017.0046828769799papers
Müller HM, Schäfer N, Bauer H, Geiger D, Lautner S, Fromm J, Riederer M, Bueno A, Nussbaumer T, Mayer K, Alquraishi SA, Alfarhan AH, Neher E, Al-Rasheid KAS, Ache P, Hedrich RThe desert plant Phoenix dactylifera closes stomata via nitrate-regulated SLAC1 anion channel.New Phytol.20171150-16210.1111/nph.1467228670699papers
Collingro A, Köstlbacher S, Greuter L, Stepanauskas R, Hallam SJ, Horn MUnexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae.ISME J2017102334-234410.1038/ismej.2017.9528644443papers
Tsao HF, Scheikl U, Volland JM, Köhsler M, Bright M, Walochnik J, Horn M'Candidatus Cochliophilus cryoturris' (Coxiellaceae), a symbiont of the testate amoeba Cochliopodium minus.Sci Rep20171339410.1038/s41598-017-03642-828611430papers
König L, Siegl A, Penz T, Haider S, Wentrup C, Polzin J, Mann E, Schmitz-Esser S, Domman D, Horn MBiphasic Metabolism and Host Interaction of a Chlamydial Symbiont.mSystems20172e00202-1610.1128/mSystems.00202-1628593198papers
Oswald K, Graf JS, Littmann S, Tienken D, Brand A, Wehrli B, Albertsen M, Daims H, Wagner M, Kuypers MM, Schubert CJ, Milucka JCrenothrix are major methane consumers in stratified lakes.ISME J201792124-214010.1038/ismej.2017.7728585934papers
Singer E, Wagner M, Woyke TCapturing the genetic makeup of the active microbiome in situ.ISME J201791949-196310.1038/ismej.2017.5928574490papers
Berry D, Gutierrez TEvaluating the Detection of Hydrocarbon-Degrading Bacteria in 16S rRNA Gene Sequencing Surveys.Front Microbiol20178246010.3389/fmicb.2017.0089628567035papers
Harrison JP, Berry DVibrational Spectroscopy for Imaging Single Microbial Cells in Complex Biological Samples.Front Microbiol2017867510.3389/fmicb.2017.0067528450860papers
Lang M, Berry D, Passecker K, Mesteri I, Bhuju S, Ebner F, Sedlyarov V, Evstatiev R, Dammann K, Loy A, Kuzyk O, Kovarik P, Khare V, Beibel M, Roma G, Meisner-Kober N, Gasche CHuR small-molecule inhibitor elicits differential effects in adenomatosis polyposis and colorectal carcinogenesisCancer Res.2017772424-243810.1158/0008-5472.CAN-15-172628428272 papers
Wasmund K, Mussmann M, Loy AThe life sulfuric: Microbial ecology of sulfur cycling in marine sediments.Environ Microbiol Rep20179323-34410.1111/1758-2229.1253828419734papers
Schulz F, Yutin N, Ivanova NN, Ortega DR, Lee TK, Vierheilig J, Daims H, Horn M, Wagner M, Jensen GJ, Kyrpides NC, Koonin EV, Woyke TGiant viruses with an expanded complement of translation system components.Science2017633382-8510.1126/science.aal465728386012papers
Schueller K, Riva A, Pfeiffer S, Berry D, Somoza VMembers of the Oral Microbiota Are Associated with IL-8 Release by Gingival Epithelial Cells in Healthy Individuals.Front Microbiol2017841610.3389/fmicb.2017.0041628360899papers
Samad-Zamini M, Schweiger W, Nussbaumer T, Mayer KFX, Buerstmayr HTime-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.Plant Biotechnol. J.2017111453-146410.1111/pbi.1272928332274papers
Lutz U, Nussbaumer T, Spannagl M, Diener J, Mayer KF, Schwechheimer CNatural haplotypes of non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis.Elife201710.7554/eLife.2211428294941papers
Zojer M, Schuster LN, Schulz F, Pfundner A, Horn M, Rattei TVariant profiling of evolving prokaryotic populations.PeerJ2017e299710.7717/peerj.299728224054papers
Sauder LA, Albertsen M, Engel K, Schwarz J, Nielsen PH, Wagner M, Neufeld JDCultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system.ISME J201751142-115710.1038/ismej.2016.19228195581papers
Thannesberger J, Hellinger HJ, Klymiuk I, Kastner MT, Rieder FJ, Schneider M, Fister S, Lion T, Kosulin K, Laengle J, Bergmann M, Rattei T, Steininger CViruses comprise an extensive pool of mobile genetic elements in eukaryote cell cultures and human clinical samples.FASEB J.201710.1096/fj.201601168R28179422papers
Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S, Gomes Neto JC, Boekschoten MV, Schwab C, Urich T, Ramer-Tait AE, Rattei T, Stecher B, Berry DLifestyle and horizontal gene transfer-mediated evolution of Mucispirillum schaedleri, a core member of the murine gut microbiotamSystems20172e00171-1610.1128/mSystems.00171-1628168224 papers
Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S, Gomes Neto JC, Boekschoten MV, Schwab C, Urich T, Ramer-Tait AE, Rattei T, Stecher B, Berry DLifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.mSystems2017110.1128/mSystems.00171-1628168224papers
Di Giglio MG, Muttenthaler M, Harpsøe K, Liutkeviciute Z, Keov P, Eder T, Rattei T, Arrowsmith S, Wray S, Marek A, Elbert T, Alewood PF, Gloriam DE, Gruber CWDevelopment of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide.Sci Rep20174100210.1038/srep4100228145450papers
Stecher B, Clavel T, Loy A, Berry DPrinciples of Systems Biology, No. 13 - A pathogen-resistant designer microbiotaCell Systems201743-610.1016/j.cels.2017.01.00628125792other
Sato Y, Ling EY, Turaev D, Laffy P, Weynberg KD, Rattei T, Willis BL, Bourne DGUnraveling the microbial processes of black band disease in corals through integrated genomics.Sci Rep20174045510.1038/srep4045528094312papers
Mussmann M, Pjevac P, Krüger K, Dyksma SGenomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments.ISME J201751276-128110.1038/ismej.2016.18528060363papers
Pereira FC, Berry DMicrobial nutrient niches in the gut.Environ. Microbiol.201741366-137810.1111/1462-2920.1365928035742papers
Hochkogler CM, Lieder B, Rust P, Berry D, Meier SM, Pignitter M, Riva A, Leitinger A, Bruk A, Wagner S, Hans J, Widder S, Ley JP, Krammer GE, Somoza VA 12-week intervention with nonivamide, a TRPV1 agonist, prevents a dietary-induced body fat gain and increases peripheral serotonin in moderately overweight subjects.Mol Nutr Food Res20175160073110.1002/mnfr.20160073128012242papers
Spannagl M, Nussbaumer T, Bader K, Gundlach H, Mayer KFPGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data.Methods Mol. Biol.201733-4410.1007/978-1-4939-6658-5_227987163papers
Szabó G, Schulz F, Toenshoff ER, Volland JM, Finkel OM, Belkin S, Horn MConvergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts.ISME J20173715-72610.1038/ismej.2016.14827983719papers
Manzano-Marín A, Szabó G, Simon JC, Horn M, Latorre AHappens in the best of subfamilies: establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids.Environ. Microbiol.20171393-40810.1111/1462-2920.1363327902872papers
Ponnudurai R, Kleiner M, Sayavedra L, Petersen JM, Moche M, Otto A, Becher D, Takeuchi T, Satoh N, Dubilier N, Schweder T, Markert SMetabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis.ISME J201711463–47710.1038/ismej.2016.12427801908papers
Butler RN, Kosek M, Krebs N, Loechl C, Loy A, Owino V, Zimmermann M, and Morrison DJStable isotope techniques for the assessment of host and microbiota response during gastrointestinal dysfunctionJ Pediatr Gastroenterol Nutr2017648-1410.1097/MPG.000000000000137327632432papers
Riva A, Borgo F, Lassandro C, Verduci E, Morace G, Borghi E, Berry DPediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations Environ. Microbiol.2017195-10510.1111/1462-2920.1346327450202papers